“A lot of us have these infections in us. It’s the consequence of our modern-day lifestyles, high stress, poor diets, and environmental toxins. Our immune systems just can’t keep up with it.”
– Nikolas Hedberg, D.C. & autoimmune-infection expert
To heal from or prevent an autoimmune condition you must identify your body’s unique environmental triggers so you can eliminate them or minimize your exposure.
Growing scientific evidence indicates that chronic infections from bacteria, viruses, parasites and fungi may be the primary environmental trigger for autoimmune disorders.1 According to many holistic practitioners who treat autoimmune conditions, there is almost always a hidden infection that either precedes the initial autoimmune attack or that appears opportunistically when the immune system is weakened. My experience corroborates this. In my holistic, Functional Medicine Autoimmune Reversal practice, we find at least one hidden infection 95%+ of the time in clients who seek healing. Most frequently we find Candida, parasites, Lyme co-infections, reactivated EBV, and mycoplasma pneumonia.
Oral Infection Triggers Rheumatoid Arthritis
In this story, renowned immunologist Aristo Vojdani, PhD, describes the likely trigger of his mother’s rheumatoid arthritis (RA). Mrs. Vojdani went to the dentist with an infection in several teeth. Dr. Vojdani relates what likely followed:
“My mother likely had a Porphyromonas gingivalis or Streptococcus sanguis infection. These are two kinds of oral bacteria that can cause infection. Each of these bacterial strains releases a toxin. The dentist removed the teeth, the barriers were broken, and these toxins got into her bloodstream immediately. She started making antibodies [immune system defense] against the toxins and, because of the molecular similarity between the toxin and her joints (molecular mimecry), her immune cells started attacking her joints. After 5 years, she developed rheumatoid arthritis. Her pain became so severe that eventually she required a total knee replacement.”
While Mrs. Vojdani never healed from the RA, this personal experience motivated Dr. Vojdani to study environmental factors in autoimmunity and eventually develop lab tests to detect early autoimmune reactivity. Key takeaway: If you have gingivitis or periodontal disease work with a biological dentist to clear those infections before having dental surgery.
Lyme Disease Mimics and Exacerbates RA, MS, Hashimoto’s
After many years of conventional treatment for rheumatoid arthritis, multiple sclerosis, and Hashimoto’s thyroiditis, Martha, at 64, became a patient of Richard Horowitz, MD, author and Lyme expert. Dr. Horowitz ordered tests for Lyme disease, and they came back positive. “Lyme disease co-infections were mimicking and exacerbating Martha’s [autoimmune] disorders and were responsible for some of her resistant symptoms (i.e., numbness, tingling, joint pain, fatigue and balance issues, etc.).” Once she was treated for the Lyme co-infections, Martha’s resistant symptoms cleared and she recovered.
Viral and Fungal Infections at the Root of Lupus
After a ten-year history of lupus, aches and pains, a mysterious rash, profound fatigue, and weight loss resistance, Kara signed up for my Functional Medicine Autoimmune Reversal program. Lab work confirmed a fungal infection in her sinuses, candida overgrowth, reactivated EBV, and walking pneumonia. Kara was 100% committed to getting well. She embarked on a 30-day food vacation and discovered that she was sensitive to grains, eggs and nightshades; she modified her lifestyle to be in bed by 9:30 pm; she began meditating and writing in a gratitude journal daily; she took targeted supplements and herbs; and within 5 months, Kara’s symptoms subsided. Within 9 months her lab results improved, her energy returned, her rash vanished, her joint pain diminished, her digestion dramatically improved, and she was finally able to lose 27 pounds of inflammatory weight.
Infections are common throughout our lifetime, but it is actually fairly rare that they lead to an autoimmune disorder. By the time you are 20 it’s likely that you’ve been exposed to or had:
Scientists believe that a variety of factors must usually be present for an infection to result in an autoimmune condition, including a genetic predisposition and other inflammatory lifestyle factors like stress, a SAD diet, poor sleep, leaky gut, etc. 2
According to many healthcare practitioners who treat autoimmune conditions, if patients don’t get better after addressing food triggers and correcting nutrient deficiencies, it’s time to dig deeper and test for hidden infections. These are common infections linked to specific autoimmune disorders. For a more comprehensive list, check out the Clear Infections chapter in my book, Beat Autoimmune: The 6 Keys to Reverse Your Condition and Reclaim Your Health. Note: If you don’t see your autoimmune disorder listed, Google: “[Name of your autoimmune condition] and infections” to explore further.
Autoimmune Disorder | Commonly Linked Infection |
| Multiple sclerosis (MS) | Human herpesvirus 6 (HHV-6), Epstein-Barr virus (EBV aka herpesvirus 4), Rubella, influenza virus, and Human Papilloma Virus (HPV), Chlamydia, Borrelia burgdorferi, and measles virus |
| Type 1 diabetes | Coxsackievirus B4, cytomegalovirus (CMV), mumps virus, and rubella virus |
| Rheumatoid arthritis (RA) | EBV, hepatitis C virus, E-coli bacteria, Citrobacter, Klebsiella, Proteus, Parvovirus, Mycoplasma infection |
| Sjögren’s Syndrome | EBV |
| Systemic lupus erythematosus (SLE) | EBV |
| Myocarditis | CB3, CMV, Chlamydia |
| Hashimoto’s thyroiditis & Graves | Porphyromonas Yersinia, EBV |
| Myasthenia gravis | Hepatitis C virus (HCV), herpes simplex virus |
| Guillain-Barré syndrome | EBV, CMV, Campylobacter bacteria |
| Autoimmune urticaria, psoriasis, alopecia areata and Schoenlein-Henoch purpura | Helicobacter pylori (H. pylori) |
| Celiac Disease, Irritable Bowel Syndrome (IBS), Inflammatory Bowel Disease (IBD), Crohn’s Disease | Small Intestinal Bacterial Overgrowth (SIBO) |
These infections usually occur well before – sometimes years before — any symptoms associated with autoimmunity develop, so it can be difficult to make a definitive link between a particular infection and a specific autoimmune disorder.
The relationship between infections and autoimmune diseases is often described as “multifaceted and multidirectional,” involving a multitude of complex actions and reactions in the body. Although infections may be a trigger for the illness, many infections likely occur and persist due to the illness itself, setting up a vicious cycle of infection and illness.8 Infections are opportunistic and often travel together – many autoimmune patients eventually discover that they have multiple bacterial, viral, parasitic and/or fungal infections.
According to Lee Cowden, MD, board-certified cardiologist, teacher of integrative health, and founder of the Cowden Protocol to treat persistent Lyme, the key to recovery is to strengthen the resistance of the host. Strengthening resistance means getting your immune system in good fighting shape. That entails getting toxins out of the body and adding in nourishing lifestyle practices to optimize your immune system.
Have you ever or presently:
*Many experts believe that if you have an autoimmune condition, you also have a near-certain chance of having an infection, like Lyme (bacterial infection), Candida albicans (fungal infection), parasites, and/or viral infections too. If you answered YES to any of these questions, keep reading.
Infections are a complicated arena for sure, so do what you can to work with a practitioner skilled in finding and resolving infections that underlie autoimmunity, naturally. Titles to look for include integrative, functional or naturopath. If you’re in the U.S. and are ready, willing, and able to dig deeply into your autoimmune root causes and want to resolve them naturally, consider a Functional Medicine Autoimmune Reversal Program with me and my naturopathic doctor (ND)-collaborator who specializes in helping to resolve infections and toxins like chronic Lyme, parasites, Candida, and mycotoxins naturally.
Once you’ve gotten the data about any underlying infection, you’re part way to healing. Herbs and natural remedies widely used to help clear infections include monolaurin (derived from coconut oil), oregano extract, olive leaf, wormwood, berberine and silver. And, for Lyme and related co-infections three effective herbal protocols include Beyond Balance, The Buhner Protocol and The Cowden Protocol. Note that it’s important to follow and stick with recommended treatment protocols, which may take months, and ideally with the guidance of an experienced Lyme practitioner.
For a review of the basics, check out the Autoimmune Healing Manifesto. Print it out and post it somewhere where you’ll see it each day for inspiration.
Chronic viral infections – known as “lipid envelope” viruses — are stubborn because they get stored in your fat cells and lodge there indefinitely. To add insult to injury, many people with autoimmune conditions are hypometabolic, meaning that their metabolisms are s-l-o-w. If you have trouble losing weight, have cold hands and feet, have a lower basal temperature than the standard 98.6F (measured on waking over a week), and/or if you are insulin resistant, then you may be hypometabolic.
Here are a few tips to get your metabolism up and running:
Once you work to clear infections and adopt healthy lifestyle habits, your body can often eliminate many chronic infections on its own. By eliminating the infections, antibody production will lower, autoimmune symptoms will fade, and the immune system will be unburdened to do its job to defend and protect you. That’s a winning strategy to beat autoimmune and thrive.
Take good care!
If you live in the continental U.S. and are ready, willing, and able to invest in your best health, I offer Functional Medicine Total Health Transformation Programs over Zoom in collaboration with a skilled naturopathic doctor (ND). Get on my calendar for a free 30-minute discovery call.
This comprehensive book is the first to explore all six of the critical lifestyle factors that are the root causes of autoimmune conditions – and the sources of regaining health. Foreword by Mark Hyman, MD
Palmer is a certified Functional Medicine Health Coach who has helped thousands of people reverse autoimmune conditions based on her own two-decade battle to successfully beat multiple sclerosis (MS). She’s the author of the Amazon #1 bestselling book, Beat Autoimmune, which has a powerful foreword by Functional Medicine pioneer, Mark Hyman, MD.
